# HG changeset patch
# User bernhardlutz
# Date 1386277080 18000
# Node ID a77fa3336ba113167219e7ce44581052ff201342
# Parent  848f7c122f2f8b132789ef1e96bb232671235b79
Uploaded

diff -r 848f7c122f2f -r a77fa3336ba1 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Dec 05 15:58:00 2013 -0500
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="vienna_rna" version="1.8.5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
+                <action type="change_directory">Perl</action>
+                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
+                <action type="change_directory">..</action>
+                <action type="make_install" />
+                
+
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme>
+    </package>
+</tool_dependency>