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1 <tool id="rest_tool" name="Fetch Data from pubchem" version="0.1.0">
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2 <description>Fetch pubchem data</description>
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3 <version_command>echo "0.1.0"</version_command>
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4 <requirements>
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5 <requirement type="set_environment">REST_TOOL_SCRIPT_PATH</requirement>
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6 </requirements>
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7 <command>
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8 python \$GRAPHCONVERTER_SCRIPT_PATH/rest_tool.py --id $id --type $input_type --outformat $output_format
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9 </command>
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10
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11 <inputs>
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12 <param format="txt" name="id" type="text" label="Specify the ID" />
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13 <param name="input_type" multiple="false" type="select" label="Input Type">
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14 <option value="bioassay">BioAssay</option>
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15 <option value="compound">Compound</option>
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16 </param>
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17 <param name="output_format" type="select" label="Output Format">
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18 <option value="tsv">tsv</option>
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19 <option value="csv">csv</option>
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20 <option value="txt">txt</option>
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21 <option value="png">png</option>
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22 <option value="json">json</option>
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23 </param>
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24 </inputs>
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25 <outputs>
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26 <data format="csv" name="output">
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27 <change_format>
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28 <when input="output_format" value="tsv" format="tsv" />
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29 <when input="output_format" value="png" format="png" />
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30 <when input="output_format" value="csv" format="csv" />
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31 <when input="output_format" value="txt" format="txt" />
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32 <when input="output_format" value="json" format="json" />
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33 </change_format>
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34 </data>
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35 </outputs>
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36 <tests>
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37 </tests>
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38 <help>
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39 **What it does**
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40
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41 This tool fetches data from pubchem
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42 </help>
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43 </tool>
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