comparison rest_tool.xml @ 0:a9793e52a3ef draft

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0:a9793e52a3ef

<tool id="rest_tool" name="Fetch Data from pubchem" version="0.1.0">
    <description>Fetch pubchem data</description>
    <version_command>echo "0.1.0"</version_command>
    <requirements>
        <requirement type="set_environment">REST_TOOL_SCRIPT_PATH</requirement>
    </requirements>
    <command>
        python \$GRAPHCONVERTER_SCRIPT_PATH/rest_tool.py --id $id --type $input_type --outformat $output_format
    </command>

    <inputs>
        <param format="txt" name="id" type="text" label="Specify the ID" />
        <param name="input_type" multiple="false" type="select" label="Input Type">
            <option value="bioassay">BioAssay</option>
            <option value="compound">Compound</option>
        </param>
        <param name="output_format" type="select" label="Output Format">
                <option value="tsv">tsv</option>
                <option value="csv">csv</option>
                <option value="txt">txt</option>
                <option value="png">png</option>
                <option value="json">json</option>
        </param>
    </inputs>
    <outputs>
        <data format="csv" name="output">
            <change_format>
                <when input="output_format" value="tsv" format="tsv" />
                <when input="output_format" value="png" format="png" />
                <when input="output_format" value="csv" format="csv" />
                <when input="output_format" value="txt" format="txt" />
                <when input="output_format" value="json" format="json" />
            </change_format>
        </data>
    </outputs>
    <tests>
    </tests>
    <help>
**What it does**

This tool fetches data from pubchem
    </help>
</tool>