Mercurial > repos > bebatut > metaphlan2

annotate tool_dependencies.xml @ 0:35d3ad2fb7a4 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
author bebatut
date Wed, 28 Oct 2015 11:14:06 -0400
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children 8ce82a6b20d7
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35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
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1 <?xml version="1.0"?>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
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2 <tool_dependency>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
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3 <package name="bowtie2" version="2.2.5">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
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4 <repository changeset_revision="e627be2bba58" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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5 </package>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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6 <package name="metaphlan2" version="2.0">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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7 <install version="1.0">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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8 <actions>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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9 <action type="shell_command">hg clone https://bitbucket.org/biobakery/metaphlan2</action>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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10 <action type="move_directory_files">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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11 <source_directory>.</source_directory>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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12 <destination_directory>$INSTALL_DIR</destination_directory>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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13 </action>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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14 <action type="set_environment">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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15 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR</environment_variable>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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17 </action>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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18 </actions>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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19 </install>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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20 <readme />
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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21 </package>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
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22 </tool_dependency>