diff tool_dependencies.xml @ 0:35d3ad2fb7a4 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 28 11:14:06 2015 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bowtie2" version="2.2.5">
+        <repository changeset_revision="e627be2bba58" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="metaphlan2" version="2.0">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">hg clone https://bitbucket.org/biobakery/metaphlan2</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>