comparison tool_dependencies.xml @ 0:35d3ad2fb7a4 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty

0:35d3ad2fb7a4

<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.5">
        <repository changeset_revision="e627be2bba58" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone https://bitbucket.org/biobakery/metaphlan2</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>