Mercurial > repos > artbio > rsem
changeset 4:0fa0c1132a7b draft
planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit 3f67b2cf90a5de9880c98a6e492c444a5c856275
| author | artbio |
|---|---|
| date | Wed, 28 Mar 2018 10:43:28 -0400 |
| parents | 9c7c44935bf1 |
| children | 78a1909aca3e |
| files | rsem.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/rsem.xml Wed Mar 28 09:42:58 2018 -0400 +++ b/rsem.xml Wed Mar 28 10:43:28 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="rsem" name="RSEM" version="0.3.0"> +<tool id="rsem" name="RSEM" version="0.3.1"> <description></description> <macros> <import>macros.xml</import> @@ -54,7 +54,7 @@ ln -f -s '$run_rsem.input.fastq.singlefastq' 'uncomp_single.fastq' && #end if #elif $run_rsem.input.fastq.matepair=="paired": - #if $run_rsem.input.fastq.singlefastq.is_of_type('fastq.gz') or $run_rsem.input.fastq.singlefastq.is_of_type('fastqsanger.gz'): + #if $run_rsem.input.fastq.fastq1.is_of_type('fastq.gz') or $run_rsem.input.fastq.fastq1.is_of_type('fastqsanger.gz'): gunzip < '$run_rsem.input.fastq.fastq1' > uncomp_pair1.fastq && gunzip < '$run_rsem.input.fastq.fastq2' > uncomp_pair2.fastq && #elif $run_rsem.input.fastq.singlefastq.is_of_type('fastq') or $run_rsem.input.fastq.singlefastq.is_of_type('fastqsanger'):