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6
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1 \name{write.narrowpeak.binding}
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2 \alias{write.narrowpeak.binding}
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3 %- Also NEED an '\alias' for EACH other topic documented here.
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4 \title{ Write out determined binding peaks using narrowPeak format }
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5 \description{
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6 Writes out determined binding positions into a narrowPeak file.
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7 The region will correspond to associated broad enrichment region, if
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8 such were added using add.broad.peak.regions method. Otherwise the
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9 region size will be determined using margin (which defaults to the
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10 window half size that was used to determine binding positions)
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11 }
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12 \usage{
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13 write.narrowpeak.binding(results, filename,margin=results$whs)
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14 }
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15 %- maybe also 'usage' for other objects documented here.
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16 \arguments{
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17 \item{results}{ output of the \code{\link{find.binding.positions}} }
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18 \item{filename}{ file name }
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19 \item{margin}{ explicit value of the margin to be used if the borad
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20 region information is absent (defaults to peak detection window half-size}
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21 }
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