Mercurial > repos > zzhou > spp_phantompeak
comparison spp/man/write.narrowpeak.binding.Rd @ 6:ce08b0efa3fd draft
Uploaded
author | zzhou |
---|---|
date | Tue, 27 Nov 2012 16:11:40 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
5:608a8e0eac56 | 6:ce08b0efa3fd |
---|---|
1 \name{write.narrowpeak.binding} | |
2 \alias{write.narrowpeak.binding} | |
3 %- Also NEED an '\alias' for EACH other topic documented here. | |
4 \title{ Write out determined binding peaks using narrowPeak format } | |
5 \description{ | |
6 Writes out determined binding positions into a narrowPeak file. | |
7 The region will correspond to associated broad enrichment region, if | |
8 such were added using add.broad.peak.regions method. Otherwise the | |
9 region size will be determined using margin (which defaults to the | |
10 window half size that was used to determine binding positions) | |
11 } | |
12 \usage{ | |
13 write.narrowpeak.binding(results, filename,margin=results$whs) | |
14 } | |
15 %- maybe also 'usage' for other objects documented here. | |
16 \arguments{ | |
17 \item{results}{ output of the \code{\link{find.binding.positions}} } | |
18 \item{filename}{ file name } | |
19 \item{margin}{ explicit value of the margin to be used if the borad | |
20 region information is absent (defaults to peak detection window half-size} | |
21 } |