Mercurial > repos > zzhou > bamedit

changeset 71:ec59db4dc58e draft

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Uploaded
author zzhou
date Mon, 26 Nov 2012 15:00:01 -0500
parents 6e373fe6ba95
children ef68dddc6c64
files bamedit.py
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/bamedit.py	Mon Nov 26 14:56:34 2012 -0500
+++ b/bamedit.py	Mon Nov 26 15:00:01 2012 -0500
@@ -13,10 +13,7 @@
 def main():
     options = simplejson.load( open( sys.argv[1] ) )
 
-    asdf = os.system('$SCRIPT_PATH')
-    print asdf
-
-    testing = sys.argv[2]
+    testing = sys.argv
     print testing
     if(options['action'] == "merge"):
 	cmdline = "samtools merge  %s %s %s" % ( options['bamout'], options['input1'], options['input2'] )