Mercurial > repos > zzhou > bamedit

changeset 70:6e373fe6ba95 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author zzhou
date Mon, 26 Nov 2012 14:56:34 -0500
parents 8420ca95e4a3
children ec59db4dc58e
files bamedit.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bamedit.xml	Mon Nov 26 14:56:28 2012 -0500
+++ b/bamedit.xml	Mon Nov 26 14:56:34 2012 -0500
@@ -9,7 +9,7 @@
     <requirement type="package" version="0.1.12">samtools</requirement>
   </requirements>
   <description>Merging, splitting, filtering, and QC of BAM files</description>
-  <command interpreter="python">bamedit.py $options_file 'echo \$SCRIPT_PATH'</command>
+  <command interpreter="python">bamedit.py $options_file 'printenv SCRIPT_PATH'</command>
   <inputs>
     <conditional name="input_type">
       <param name="input_type_selector" type="select" label="Select your BAM command">