Mercurial > repos > yukke > samtools_v1_1

changeset 2:7019465fef45

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Add example
author soh.ishiguro3914@gmail.com
date Fri, 21 Nov 2014 16:38:38 +0900
parents 8373595ba3be
children ff0439a80cdd
files samtools_v1_1.xml
diffstat 1 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_v1_1.xml	Fri Nov 21 16:31:41 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 16:38:38 2014 +0900
@@ -27,12 +27,20 @@
         <option value="bamshuf">bamshuf</option>
       </param>
       <when value="sort">
-        <param format="sam" name="inputfile" type="data" label="sort alignment file">
+        <param name="species" type="select" label="Select a reference genome">
+          <option value="mm9">mm9</option>
+          <option value="mm10">mm10</option>
+          <option value="hg19">hg19</option>
         </param>
       </when>
       <when value="index">
-        <param format="sam" name="inputfile" type="data" label="indexing alignment file">
-        </param>
+        <param format="bam" name="inputfile" type="data" label="index file"/>
+      </when>
+      <when value="view">
+        <param format="bam" name="inputfile" type="data" label="view file"/>
+      </when>
+      <when value="mpileup">
+        <param format="bam" name="inputfile" type="data" label="mpileup file"/>
       </when>
     </conditional>
   </inputs>