# HG changeset patch
# User soh.ishiguro3914@gmail.com
# Date 1416555518 -32400
# Node ID 7019465fef450798a0f63a5e4bdbdfacdf53839a
# Parent  8373595ba3be6c2413e955c098e117480586686a
Add example

diff -r 8373595ba3be -r 7019465fef45 samtools_v1_1.xml
--- a/samtools_v1_1.xml	Fri Nov 21 16:31:41 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 16:38:38 2014 +0900
@@ -27,12 +27,20 @@
         <option value="bamshuf">bamshuf</option>
       </param>
       <when value="sort">
-        <param format="sam" name="inputfile" type="data" label="sort alignment file">
+        <param name="species" type="select" label="Select a reference genome">
+          <option value="mm9">mm9</option>
+          <option value="mm10">mm10</option>
+          <option value="hg19">hg19</option>
         </param>
       </when>
       <when value="index">
-        <param format="sam" name="inputfile" type="data" label="indexing alignment file">
-        </param>
+        <param format="bam" name="inputfile" type="data" label="index file"/>
+      </when>
+      <when value="view">
+        <param format="bam" name="inputfile" type="data" label="view file"/>
+      </when>
+      <when value="mpileup">
+        <param format="bam" name="inputfile" type="data" label="mpileup file"/>
       </when>
     </conditional>
   </inputs>