Mercurial > repos > yukke > samtools_v1_1

changeset 7:64a012fe92e3

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Add flagstat
author soh.ishiguro3914@gmail.com
date Fri, 21 Nov 2014 18:11:38 +0900
parents 7a9c736bc13c
children 3e36d134d1c8
files samtools_v1_1.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_v1_1.xml	Fri Nov 21 18:04:42 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 18:11:38 2014 +0900
@@ -38,8 +38,11 @@
         <param format="bam" name="inputfile" type="data" label="index bam file"/>
       </when>
       <when value="flagstat">
-        <data format="txt" name="outfile" metadata_source="inputfile"/>
+        <data format="txt" name="inputfile" type="data" label="stats of flagstats"/>
       </when>
     </conditional>
   </inputs>
+  <outputs>
+    <data format="txt" name="outfile" metadata_source="inputfile"/>
+  </outputs>
 </tool>