# HG changeset patch
# User soh.ishiguro3914@gmail.com
# Date 1416561098 -32400
# Node ID 64a012fe92e386cd96108f024bb8b05c4ddd4c22
# Parent  7a9c736bc13c45951c5adb22cd338af6151a231c
Add flagstat

diff -r 7a9c736bc13c -r 64a012fe92e3 samtools_v1_1.xml
--- a/samtools_v1_1.xml	Fri Nov 21 18:04:42 2014 +0900
+++ b/samtools_v1_1.xml	Fri Nov 21 18:11:38 2014 +0900
@@ -38,8 +38,11 @@
         <param format="bam" name="inputfile" type="data" label="index bam file"/>
       </when>
       <when value="flagstat">
-        <data format="txt" name="outfile" metadata_source="inputfile"/>
+        <data format="txt" name="inputfile" type="data" label="stats of flagstats"/>
       </when>
     </conditional>
   </inputs>
+  <outputs>
+    <data format="txt" name="outfile" metadata_source="inputfile"/>
+  </outputs>
 </tool>