Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 64:bafa6c859303 draft

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Uploaded
author yhoogstrate
date Wed, 05 Mar 2014 11:08:17 -0500
parents 38ea7a0450bc
children 19360b35f760
files varscan_mpileup2snp.xml
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/varscan_mpileup2snp.xml	Wed Mar 05 10:52:11 2014 -0500
+++ b/varscan_mpileup2snp.xml	Wed Mar 05 11:08:17 2014 -0500
@@ -17,9 +17,8 @@
 				 --min-var-freq	 $varscan_min_var_freq
 				 --min-freq-for-hom $varscan_min_freq_for_hom
 				 --p-value		  $varscan_p_value
-				$varscan_strand_filter
-				$varscan_output_vcf
-				$varscan_variants
+				 $varscan_strand_filter 
+				 $varscan_variants 
 		#end if
 		
 		#if $varscan_output_vcf