# HG changeset patch
# User yhoogstrate
# Date 1394035697 18000
# Node ID bafa6c859303d90e35e259ac998f2dd46edbef94
# Parent  38ea7a0450bc7c254e4620062c166e88a3975d71
Uploaded

diff -r 38ea7a0450bc -r bafa6c859303 varscan_mpileup2snp.xml
--- a/varscan_mpileup2snp.xml	Wed Mar 05 10:52:11 2014 -0500
+++ b/varscan_mpileup2snp.xml	Wed Mar 05 11:08:17 2014 -0500
@@ -17,9 +17,8 @@
 				 --min-var-freq	 $varscan_min_var_freq
 				 --min-freq-for-hom $varscan_min_freq_for_hom
 				 --p-value		  $varscan_p_value
-				$varscan_strand_filter
-				$varscan_output_vcf
-				$varscan_variants
+				 $varscan_strand_filter 
+				 $varscan_variants 
 		#end if
 		
 		#if $varscan_output_vcf