Mercurial > repos > yhoogstrate > varscan_mpileup2snp_from_bam

changeset 76:344f5b5ddfd3 draft

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Uploaded
author yhoogstrate
date Tue, 10 Jun 2014 10:08:46 -0400
parents c09dd61c0239
children f89704ed1d8f
files varscan_mpileup2snp_from_bam.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/varscan_mpileup2snp_from_bam.xml	Tue Jun 10 09:48:26 2014 -0400
+++ b/varscan_mpileup2snp_from_bam.xml	Tue Jun 10 10:08:46 2014 -0400
@@ -37,9 +37,9 @@
 					#end if
 			
 			#if $extended_parameters_regions.samtools_regions == "region"
-				-r $extended_parameters_regions.$samtools_r
+				 -r $extended_parameters_regions.samtools_r
 			#elif $extended_parameters_regions.samtools_regions == "regions_file_pos" or $extended_parameters_regions.samtools_regions == "regions_file_bed"
-				-l $extended_parameters_regions.$samtools_l
+				 -l $extended_parameters_regions.samtools_l
 			#end if
 			
 			#if $extended_parameters.parameters == "extended"