# HG changeset patch
# User yhoogstrate
# Date 1402409326 14400
# Node ID 344f5b5ddfd3e0152d4e184b9a0042bbe17750a9
# Parent  c09dd61c02394749d94ee127ebce94d55aec926f
Uploaded

diff -r c09dd61c0239 -r 344f5b5ddfd3 varscan_mpileup2snp_from_bam.xml
--- a/varscan_mpileup2snp_from_bam.xml	Tue Jun 10 09:48:26 2014 -0400
+++ b/varscan_mpileup2snp_from_bam.xml	Tue Jun 10 10:08:46 2014 -0400
@@ -37,9 +37,9 @@
 					#end if
 			
 			#if $extended_parameters_regions.samtools_regions == "region"
-				-r $extended_parameters_regions.$samtools_r
+				 -r $extended_parameters_regions.samtools_r
 			#elif $extended_parameters_regions.samtools_regions == "regions_file_pos" or $extended_parameters_regions.samtools_regions == "regions_file_bed"
-				-l $extended_parameters_regions.$samtools_l
+				 -l $extended_parameters_regions.samtools_l
 			#end if
 			
 			#if $extended_parameters.parameters == "extended"