Mercurial > repos > yhoogstrate > samtools_view_header

changeset 2:1a77794c72ed draft

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Uploaded
author yhoogstrate
date Wed, 11 Jun 2014 08:34:22 -0400
parents e233adca8052
children 257f28d66de8
files samtools_view_header.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_view_header.xml	Wed Jun 11 08:23:00 2014 -0400
+++ b/samtools_view_header.xml	Wed Jun 11 08:34:22 2014 -0400
@@ -18,7 +18,7 @@
 	</command>
 	
 	<inputs>
-		<param format="sam,bam" name="alignment" type="data" label="Alignments in BAM or SAM format" help="The set of aligned reads." />
+		<param format="sam,bam" name="alignment" type="data" label="Alignment in BAM or SAM format" />
 	</inputs>
 	
 	<outputs>
@@ -26,14 +26,20 @@
 	</outputs>
 	
 	<help>
-**samtools view -H **
+**samtools_view_header**
 
 **Input formats**
 
 * BAM
 * SAM
 
+**Output format**
+
+The SAM header as defined in the SAM specification. If the output is empty, there was no header in the alignment
+
+
 **Installation**
+
 The installation is straight-forward and should go automatically using the Galaxy tool-shed installer.
 
 **License**