# HG changeset patch
# User yhoogstrate
# Date 1402490062 14400
# Node ID 1a77794c72ed8c5d3d7db1213fa7db28839351bd
# Parent  e233adca80521cee9d712ed8be3d9def4f4230cd
Uploaded

diff -r e233adca8052 -r 1a77794c72ed samtools_view_header.xml
--- a/samtools_view_header.xml	Wed Jun 11 08:23:00 2014 -0400
+++ b/samtools_view_header.xml	Wed Jun 11 08:34:22 2014 -0400
@@ -18,7 +18,7 @@
 	</command>
 	
 	<inputs>
-		<param format="sam,bam" name="alignment" type="data" label="Alignments in BAM or SAM format" help="The set of aligned reads." />
+		<param format="sam,bam" name="alignment" type="data" label="Alignment in BAM or SAM format" />
 	</inputs>
 	
 	<outputs>
@@ -26,14 +26,20 @@
 	</outputs>
 	
 	<help>
-**samtools view -H **
+**samtools_view_header**
 
 **Input formats**
 
 * BAM
 * SAM
 
+**Output format**
+
+The SAM header as defined in the SAM specification. If the output is empty, there was no header in the alignment
+
+
 **Installation**
+
 The installation is straight-forward and should go automatically using the Galaxy tool-shed installer.
 
 **License**