Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

changeset 9:ede46649eecd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit c6608bd5256e5c54cb2e01be6c184da0d2b08a7c-dirty
author yhoogstrate
date Thu, 19 May 2016 06:49:39 -0400
parents 331b6ada96cf
children 3861f2be5d38
files tool_dependencies.xml
diffstat 1 files changed, 10 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu May 19 05:50:43 2016 -0400
+++ b/tool_dependencies.xml	Thu May 19 06:49:39 2016 -0400
@@ -40,7 +40,16 @@
                 </action>
                 
                 <action type="shell_command">
-                    ls
+                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    make                                                                    &amp;&amp;
+                    make check                                                              &amp;&amp;
+                    make install
+                </action>
+                
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
                 </action>
             </actions>
         </install>