# HG changeset patch
# User yhoogstrate
# Date 1463654979 14400
# Node ID ede46649eecd951130ed21d3f2c342cb76ba8d99
# Parent  331b6ada96cfcea4f8251630962c5bf47264bcef
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit c6608bd5256e5c54cb2e01be6c184da0d2b08a7c-dirty

diff -r 331b6ada96cf -r ede46649eecd tool_dependencies.xml
--- a/tool_dependencies.xml	Thu May 19 05:50:43 2016 -0400
+++ b/tool_dependencies.xml	Thu May 19 06:49:39 2016 -0400
@@ -40,7 +40,16 @@
                 </action>
                 
                 <action type="shell_command">
-                    ls
+                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    make                                                                    &amp;&amp;
+                    make check                                                              &amp;&amp;
+                    make install
+                </action>
+                
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
                 </action>
             </actions>
         </install>