Mercurial > repos > yhoogstrate > package_segmentation_fold_1_6_5

changeset 16:6952a20fa81a draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 6545dbf0edf3a0f9afda8d5a27a646253c8f7115
author yhoogstrate
date Thu, 26 May 2016 06:51:29 -0400
parents f4043c6a367a
children
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed May 25 05:08:31 2016 -0400
+++ b/tool_dependencies.xml	Thu May 26 06:51:29 2016 -0400
@@ -34,9 +34,7 @@
                     <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="boost" version="1.57" />
                     </repository>
-                </action>
-                
-                <action type="set_environment_for_install">
+                    
                     <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="cmake" version="3.2.3" />
                     </repository>
@@ -99,6 +97,9 @@
                 <action type="shell_command">
                     export PYTHONPATH="$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python"  &amp;&amp;
                     cd scripts/energy-estimation-utility                                               &amp;&amp;
+                    echo "---------------------------------------------------------------------------" &amp;&amp;
+                    head -n 161 segmentation_fold_utils/XMLFile.py | tail -n 11                        &amp;&amp;
+                    echo "---------------------------------------------------------------------------" &amp;&amp;
                     python setup.py install --home "$INSTALL_DIR" --install-scripts "$INSTALL_DIR/bin"
                 </action>