Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6

annotate tool_dependencies.xml @ 1:0b6d65d9f103 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
author yhoogstrate
date Thu, 10 Sep 2015 04:54:08 -0400
parents 4274314879c8
children 7a484ebcbf48
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4274314879c8 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259
yhoogstrate
parents:
diff changeset
1 <?xml version="1.0"?>
4274314879c8 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259
yhoogstrate
parents:
diff changeset
2 <tool_dependency>
1
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
3 <package name="featurecounts" version="1.4.6.p1">
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
4 <install version="1.0">
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
5 <actions>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
6 <action type="download_by_url"
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
7 sha256sum="48e0c516684c4771f965a0a3010fbc0ad55fb54cfd8f7090be3f55e7b5c09f36">http://sourceforge.net/projects/subread/files/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz/download</action>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
8 <action type="shell_command"><![CDATA[
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
9 cd subread-1.4.6-p1-source/src/ &&
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
10 make -f Makefile.Linux &&
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
11 cd ../../
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
12 ]]></action>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
13 <action type="move_file">
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
14 <source>../subread-1.4.6-p1-source/bin/featureCounts</source>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
15 <destination>$INSTALL_DIR/bin/</destination>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
16 </action>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
17 <action type="set_environment">
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
19 </action>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
20 </actions>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
21 </install>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
22 <readme>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
23 Downloads and installs featureCounts.
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
24
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
25 Prerequisites:
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
26 - wget
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
27 - gnu-autotools (make)
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
28 - tar
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
29 </readme>
0b6d65d9f103 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 0
diff changeset
30 </package>
0
4274314879c8 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259
yhoogstrate
parents:
diff changeset
31 </tool_dependency>