Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6

view tool_dependencies.xml @ 1:0b6d65d9f103 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
author yhoogstrate
date Thu, 10 Sep 2015 04:54:08 -0400
parents 4274314879c8
children 7a484ebcbf48
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="featurecounts" version="1.4.6.p1">
        <install version="1.0">
            <actions>
                <action type="download_by_url"
                    sha256sum="48e0c516684c4771f965a0a3010fbc0ad55fb54cfd8f7090be3f55e7b5c09f36">http://sourceforge.net/projects/subread/files/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz/download</action>
                <action type="shell_command"><![CDATA[
                    cd subread-1.4.6-p1-source/src/ &&
                    make -f Makefile.Linux          &&
                    cd ../../
                ]]></action>
                <action type="move_file">
                    <source>../subread-1.4.6-p1-source/bin/featureCounts</source>
                    <destination>$INSTALL_DIR/bin/</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Downloads and installs featureCounts.

            Prerequisites:
            - wget
            - gnu-autotools (make)
            - tar
        </readme>
    </package>
</tool_dependency>