Mercurial > repos > yhoogstrate > fuma
changeset 6:b92f986bd0ab draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
| author | yhoogstrate |
|---|---|
| date | Mon, 01 Jun 2015 05:18:14 -0400 |
| parents | fb762ef764a9 |
| children | 77c5a17f335b |
| files | fuma.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 24 deletions(-) [+] |
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--- a/fuma.xml Thu Apr 02 08:19:36 2015 -0400 +++ b/fuma.xml Mon Jun 01 05:18:14 2015 -0400 @@ -165,4 +165,7 @@ UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser. </help> + + <citations> + </citations> </tool>
--- a/tool_dependencies.xml Thu Apr 02 08:19:36 2015 -0400 +++ b/tool_dependencies.xml Mon Jun 01 05:18:14 2015 -0400 @@ -1,29 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="fuma" version="2.7.1"> - <install version="1.0"> - <actions> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="make_directory">$INSTALL_DIR/lib64/python</action> - - <action type="shell_command"> - git clone https://github.com/yhoogstrate/fuma.git fuma && - cd fuma && - git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 && - - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && - python setup.py build && - python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin - </action> - - <action type="set_environment"> - <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> - Downloads and installs Fuma; requires python pip and get to be installed. - </readme> + <repository changeset_revision="71c75e0d0966" name="package_fuma_2_7_1" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>