# HG changeset patch # User yhoogstrate # Date 1433150294 14400 # Node ID b92f986bd0ab2cff78edb4298fda7546431ae65f # Parent fb762ef764a97d6a236750d988fdb84c2a384628 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty diff -r fb762ef764a9 -r b92f986bd0ab fuma.xml --- a/fuma.xml Thu Apr 02 08:19:36 2015 -0400 +++ b/fuma.xml Mon Jun 01 05:18:14 2015 -0400 @@ -165,4 +165,7 @@ UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser. + + + diff -r fb762ef764a9 -r b92f986bd0ab tool_dependencies.xml --- a/tool_dependencies.xml Thu Apr 02 08:19:36 2015 -0400 +++ b/tool_dependencies.xml Mon Jun 01 05:18:14 2015 -0400 @@ -1,29 +1,6 @@ - - - $INSTALL_DIR/lib/python - $INSTALL_DIR/lib64/python - - - git clone https://github.com/yhoogstrate/fuma.git fuma && - cd fuma && - git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 && - - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && - python setup.py build && - python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin - - - - $INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python - $INSTALL_DIR/bin - - - - - Downloads and installs Fuma; requires python pip and get to be installed. - +