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changeset 21:262d9457ad84 draft

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Uploaded
author yhoogstrate
date Wed, 25 Mar 2015 16:07:51 -0400
parents ac69be28e786
children 79b54b3c4472
files flaimapper-gtf-from-fasta.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/flaimapper-gtf-from-fasta.xml	Wed Mar 25 12:37:45 2015 -0400
+++ b/flaimapper-gtf-from-fasta.xml	Wed Mar 25 16:07:51 2015 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="flaimapper" name="FlaiMapper" version="1.1.5.b">
+<tool id="flaimapper-gtf-from-fasta" name="FlaiMapper" version="1.1.5.b">
 	<description>Extract GTF file from FASTA file (as FlaiMapper reference).</description>
 	<requirements>
 		<requirement type="package" version="0.8.2.1">pysam</requirement>
@@ -11,7 +11,7 @@
 	<command>
 		gtf-from-fasta
 			 -o $output
-			 $fasta
+			    $fasta
 	</command>
 	
 	<inputs>
@@ -19,7 +19,7 @@
 	</inputs>
 	
 	<outputs>
-		<data format="gtf" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
+		<data format="gtf" name="output" label="${tool.name} on ${fasta}" />
 	</outputs>
 	
 	<help>