# HG changeset patch
# User yhoogstrate
# Date 1427314071 14400
# Node ID 262d9457ad841ef9e9e84ba72e3b1f8914f0b4a6
# Parent  ac69be28e78697c72b58f97d201716bc1de5ba0b
Uploaded

diff -r ac69be28e786 -r 262d9457ad84 flaimapper-gtf-from-fasta.xml
--- a/flaimapper-gtf-from-fasta.xml	Wed Mar 25 12:37:45 2015 -0400
+++ b/flaimapper-gtf-from-fasta.xml	Wed Mar 25 16:07:51 2015 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="flaimapper" name="FlaiMapper" version="1.1.5.b">
+<tool id="flaimapper-gtf-from-fasta" name="FlaiMapper" version="1.1.5.b">
 	<description>Extract GTF file from FASTA file (as FlaiMapper reference).</description>
 	<requirements>
 		<requirement type="package" version="0.8.2.1">pysam</requirement>
@@ -11,7 +11,7 @@
 	<command>
 		gtf-from-fasta
 			 -o $output
-			 $fasta
+			    $fasta
 	</command>
 	
 	<inputs>
@@ -19,7 +19,7 @@
 	</inputs>
 	
 	<outputs>
-		<data format="gtf" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
+		<data format="gtf" name="output" label="${tool.name} on ${fasta}" />
 	</outputs>
 	
 	<help>