view tool_dependencies.xml @ 5:059d62372e38 draft

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author yhoogstrate
date Fri, 07 Nov 2014 10:35:15 -0500
parents fec346894871
children 23511bb75535
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<?xml version="1.0"?>
<tool_dependency>
	<package name="pysam" version="0.7.7">
		<repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
	</package>
	
	<package name="flaimapper" version="1.1.0">
		<install version="1.0">
			<actions>
				<action type="shell_command">git clone --recursive https://github.com/yhoogstrate/flaimapper.git ; cd flaimapper ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd src ; python setup.py build</action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit -->
				<action type="make_directory">$INSTALL_DIR/lib/python</action>
				<action type="make_directory">$INSTALL_DIR/lib64/python</action>
				<action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
				
				<action type="set_environment">
					<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
				</action>
			</actions>
		</install>
	</package>
</tool_dependency>