comparison tool_dependencies.xml @ 5:059d62372e38 draft

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author yhoogstrate
date Fri, 07 Nov 2014 10:35:15 -0500
parents fec346894871
children 23511bb75535
comparison
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4:b0b15ff831bf 5:059d62372e38
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pysam" version="0.7.7"> 3 <package name="pysam" version="0.7.7">
4 <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 6
7 <package name="flaimapper" version="1.1.0"> 7 <package name="flaimapper" version="1.1.0">
8 <install version="1.0"> 8 <install version="1.0">
9 <actions> 9 <actions>
10 <action type="shell_command">git clone --recursive https://github.com/yhoogstrate/flaimapper.git ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd flaimapper/src ; python setup.py build </action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit --> 10 <action type="shell_command">git clone --recursive https://github.com/yhoogstrate/flaimapper.git ; cd flaimapper ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd src ; python setup.py build</action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit -->
11 <action type="make_directory">$INSTALL_DIR/lib/python</action> 11 <action type="make_directory">$INSTALL_DIR/lib/python</action>
12 <action type="make_directory">$INSTALL_DIR/lib64/python</action> 12 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
13 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> 13 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
14 14
15 <action type="set_environment"> 15 <action type="set_environment">