Mercurial > repos > yhoogstrate > featurecounts_valid_gff
changeset 15:becb1755e096
Uploaded
| author | yhoogstrate |
|---|---|
| date | Tue, 19 Nov 2013 09:34:36 -0500 |
| parents | 98c9492ef336 |
| children | 77bf5658bb50 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Nov 19 09:30:40 2013 -0500 +++ b/tool_dependencies.xml Tue Nov 19 09:34:36 2013 -0500 @@ -3,14 +3,19 @@ <package name="featurecounts_valid_gff" version="1.4.0.1"> <install version="1.0"> <actions> - <action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff && cd featurecounts-valid-gff/src && make -f Makefile.Linux && cp ../bin/featureCounts ../../ 2> /dev/null ; cd ../bin ; ls ; cd .. ; echo "" ; echo "-----" ; echo "" ; ls -als ; cd .. ; echo "" ; echo "-----" ; echo "" ; ls -als ; echo "" ; whoami ; cp featureCounts bin/featurteCounts ; cp featureCounts $INSTALL_DIR/bin/featureCounts</action> + <action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff && cd featurecounts-valid-gff/src && make -f Makefile.Linux && chmod 777 ../bin/* ; cp ../bin/featureCounts ../../ 2> /dev/null ; cd ../bin ; ls ; cd .. ; echo "" ; echo "-----" ; echo "" ; ls -als ; cd .. ; echo "" ; echo "-----" ; echo "" ; ls -als ; echo "" ; whoami ; cp featureCounts bin/featurteCounts ; cp featureCounts $INSTALL_DIR/bin/featureCounts</action> <action type="move_file"> <source>featureCounts</source> - <destination>$INSTALL_DIR/bin/featureCounts</destination> + <destination>$INSTALL_DIR/bin</destination> </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable> + </action> </actions> </install> <readme> + Downloads and installs featureCounts-valid-gff; requires SVN to be installed! </readme> </package> </tool_dependency>