Mercurial > repos > yhoogstrate > featurecounts
changeset 10:3250ee31bdbb draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit cc900436bad9c6cca1f73d438c1f158d3bfc4318
| author | yhoogstrate |
|---|---|
| date | Mon, 18 May 2015 04:45:52 -0400 |
| parents | c74b27b17d73 |
| children | 0eea16542649 |
| files | featurecounts.xml |
| diffstat | 1 files changed, 14 insertions(+), 12 deletions(-) [+] |
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--- a/featurecounts.xml Thu Mar 19 11:58:14 2015 -0400 +++ b/featurecounts.xml Mon May 18 04:45:52 2015 -0400 @@ -64,8 +64,9 @@ 2>&1 - #set $columns = [str(i+7) for i, alignment in enumerate($alignments)] - #set $columns=",".join($columns) + #set $columns = [str(i+7) for i, alignment in enumerate($alignments)] + #set $columns=",".join($columns) + #if $format == "tabdel_default" or $format.value == "tabdel_default" ; cp $output tmp.txt ; egrep -v "^#" tmp.txt > tmp2.txt @@ -195,16 +196,17 @@ <data format="tabular" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" /> <data format="tabular" name="output_summary" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])} summary" /> </outputs> - - <tests> - <test> - <param name="alignments" value="featureCounts_input1.bam,featureCounts_input2.bam" ftype="bam" /> - <param name="source_select" value="history" /> - <param name="reference_gene_sets" value="featureCounts_guide.gff" ftype="gff" /> - <output name="output" file="output.tab"/> - <output name="output_summary" file="output_summary.tab"/> - </test> - </tests> + + <tests> + <test> + <param name="alignments" value="featureCounts_input1.bam,featureCounts_input2.bam" ftype="bam" /> + <param name="source_select" value="history" /> + <param name="reference_gene_sets" value="featureCounts_guide.gff" ftype="gff" /> + <output name="output" file="output.tab"/> + <output name="output_summary" file="output_summary.tab"/> + </test> + </tests> + <help> featureCounts #############