# HG changeset patch
# User yhoogstrate
# Date 1431938752 14400
# Node ID 3250ee31bdbb6021fb564a7adcec1c9841786624
# Parent  c74b27b17d73ac24945a0eaa8509f6d7014e9eee
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit cc900436bad9c6cca1f73d438c1f158d3bfc4318

diff -r c74b27b17d73 -r 3250ee31bdbb featurecounts.xml
--- a/featurecounts.xml	Thu Mar 19 11:58:14 2015 -0400
+++ b/featurecounts.xml	Mon May 18 04:45:52 2015 -0400
@@ -64,8 +64,9 @@
 					
 					2>&1
 				
-                                #set $columns = [str(i+7) for i, alignment in enumerate($alignments)]
-                                #set $columns=",".join($columns)
+				#set $columns = [str(i+7) for i, alignment in enumerate($alignments)]
+				#set $columns=",".join($columns)
+				
 				#if $format == "tabdel_default" or $format.value == "tabdel_default"
 					; cp $output tmp.txt
 					; egrep -v "^#" tmp.txt > tmp2.txt
@@ -195,16 +196,17 @@
 		<data format="tabular" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
 		<data format="tabular" name="output_summary" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])} summary" />
 	</outputs>
-        
-        <tests>
-	    <test>
-                <param name="alignments" value="featureCounts_input1.bam,featureCounts_input2.bam" ftype="bam" />
-                <param name="source_select" value="history" />
-                <param name="reference_gene_sets" value="featureCounts_guide.gff" ftype="gff" />
-                <output name="output" file="output.tab"/>
-                <output name="output_summary" file="output_summary.tab"/>
-            </test>
-        </tests>
+	
+	<tests>
+		<test>
+			<param name="alignments" value="featureCounts_input1.bam,featureCounts_input2.bam" ftype="bam" />
+			<param name="source_select" value="history" />
+			<param name="reference_gene_sets" value="featureCounts_guide.gff" ftype="gff" />
+			<output name="output" file="output.tab"/>
+			<output name="output_summary" file="output_summary.tab"/>
+		</test>
+	</tests>
+	
 	<help>
 featureCounts
 #############