Mercurial > repos > yhoogstrate > featurecounts

annotate tool_dependencies.xml @ 15:b486372c8948 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
author yhoogstrate
date Thu, 10 Sep 2015 04:49:08 -0400
parents b2c1799ed8d1
children 0a7893453b61
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
cada2d2f0a7c Uploaded
yhoogstrate
parents:
diff changeset
1 <?xml version="1.0"?>
cada2d2f0a7c Uploaded
yhoogstrate
parents:
diff changeset
2 <tool_dependency>
15
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
3 <package name="featurecounts" version="1.4.6.p1">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
4 <repository changeset_revision="4274314879c8" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
5 </package>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
6
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
7 <package name="featurecounts2bed" version="1.0.0">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
8 <install version="1.0">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
9 <actions>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
10 <action type="shell_command">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
11 mkdir $INSTALL_DIR/bin &amp;&amp;
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
12 cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
13 </action>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
14 <action type="chmod">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
15 <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
16 </action>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
17 <action type="set_environment">
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
19 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
20 </action>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
21 </actions>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
22 </install>
b486372c8948 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 632991bfb9084ec1c9565bcd610f4cce563fe3a3
yhoogstrate
parents: 12
diff changeset
23 </package>
0
cada2d2f0a7c Uploaded
yhoogstrate
parents:
diff changeset
24 </tool_dependency>