annotate README.rst @ 12:b2c1799ed8d1 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259
author yhoogstrate
date Mon, 01 Jun 2015 07:07:09 -0400
parents 1a288d568ac1
children 0c78776423b6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
1 FeatureCounts wrapper for Galaxy
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
2 ================================
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
3
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
4 http://bioinf.wehi.edu.au/featureCounts/
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
5 http://subread.sourceforge.net/
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
6
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
7 FeatureCounts as part of the SUBREAD package is "a highly efficient and
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
8 accurate read summarization program".
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
9
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
10 Development
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
11 -----------
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
12
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
13 * Repository-Maintainer: Youri Hoogstrate
8
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
14 * Repository-Developers: Youri Hoogstrate, Marius van den Beek
7
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
15
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
16 * Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
17
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
18 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
19 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
20 Research IT (TraIT) project:
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
21
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
22 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
23
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
24 More tools by the Translational Research IT (TraIT) project can be found in the following repository:
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
25
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
26 http://toolshed.dtls.nl/
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
27
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
28 License
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
29 -------
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
30
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
31 **featureCounts**:
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
32
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
33 GPL (>=3)
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
34
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
35 **featurecounts2bed**:
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
36
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
37 GPL (>=3)
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
38
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
39 **This wrapper**:
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
40
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
41 Copyright (C) 2013-2014 Youri Hoogstrate
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
42
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
43 This program is free software: you can redistribute it and/or modify
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
44 it under the terms of the GNU General Public License as published by
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
45 the Free Software Foundation, either version 3 of the License, or
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
46 (at your option) any later version.
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
47
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
48 This program is distributed in the hope that it will be useful,
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
49 but WITHOUT ANY WARRANTY; without even the implied warranty of
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
50 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
51 GNU General Public License for more details.
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
52
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
53 You should have received a copy of the GNU General Public License
2312bedfe2a3 Uploaded
yhoogstrate
parents:
diff changeset
54 along with this program. If not, see <http://www.gnu.org/licenses/>.
8
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
55
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
56 Acknowledgements
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
57 ----------------
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
58
1a288d568ac1 Uploaded
yhoogstrate
parents: 7
diff changeset
59 I would like to thank Marius van den Beek for his contributions to this project.