|
7
|
1 FeatureCounts wrapper for Galaxy
|
|
|
2 ================================
|
|
|
3
|
|
|
4 http://bioinf.wehi.edu.au/featureCounts/
|
|
|
5 http://subread.sourceforge.net/
|
|
|
6
|
|
|
7 FeatureCounts as part of the SUBREAD package is "a highly efficient and
|
|
|
8 accurate read summarization program".
|
|
|
9
|
|
|
10 Development
|
|
|
11 -----------
|
|
|
12
|
|
|
13 * Repository-Maintainer: Youri Hoogstrate
|
|
8
|
14 * Repository-Developers: Youri Hoogstrate, Marius van den Beek
|
|
7
|
15
|
|
|
16 * Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
|
|
|
17
|
|
|
18 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
|
|
|
19 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
|
|
|
20 Research IT (TraIT) project:
|
|
|
21
|
|
|
22 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
|
|
|
23
|
|
|
24 More tools by the Translational Research IT (TraIT) project can be found in the following repository:
|
|
|
25
|
|
|
26 http://toolshed.dtls.nl/
|
|
|
27
|
|
|
28 License
|
|
|
29 -------
|
|
|
30
|
|
|
31 **featureCounts**:
|
|
|
32
|
|
|
33 GPL (>=3)
|
|
|
34
|
|
|
35 **featurecounts2bed**:
|
|
|
36
|
|
|
37 GPL (>=3)
|
|
|
38
|
|
|
39 **This wrapper**:
|
|
|
40
|
|
|
41 Copyright (C) 2013-2014 Youri Hoogstrate
|
|
|
42
|
|
|
43 This program is free software: you can redistribute it and/or modify
|
|
|
44 it under the terms of the GNU General Public License as published by
|
|
|
45 the Free Software Foundation, either version 3 of the License, or
|
|
|
46 (at your option) any later version.
|
|
|
47
|
|
|
48 This program is distributed in the hope that it will be useful,
|
|
|
49 but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
|
50 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
|
51 GNU General Public License for more details.
|
|
|
52
|
|
|
53 You should have received a copy of the GNU General Public License
|
|
|
54 along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|
8
|
55
|
|
|
56 Acknowledgements
|
|
|
57 ----------------
|
|
|
58
|
|
|
59 I would like to thank Marius van den Beek for his contributions to this project. |