annotate README.rst @ 7:2312bedfe2a3 draft

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author yhoogstrate
date Wed, 19 Nov 2014 10:07:59 -0500
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1 FeatureCounts wrapper for Galaxy
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2 ================================
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3
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4 http://bioinf.wehi.edu.au/featureCounts/
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5 http://subread.sourceforge.net/
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6
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7 FeatureCounts as part of the SUBREAD package is "a highly efficient and
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8 accurate read summarization program".
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9
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10 Development
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11 -----------
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12
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13 * Repository-Maintainer: Youri Hoogstrate
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14
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15 * Repository-Development: https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools
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16
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17 The tool wrapper has been written by Youri Hoogstrate from the Erasmus
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18 Medical Center (Rotterdam, Netherlands) on behalf of the Translational
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19 Research IT (TraIT) project:
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20
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21 http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
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22
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23 More tools by the Translational Research IT (TraIT) project can be found in the following repository:
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24
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25 http://toolshed.dtls.nl/
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26
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27 License
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28 -------
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29
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30 **featureCounts**:
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31
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32 GPL (>=3)
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33
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34 **featurecounts2bed**:
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35
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36 GPL (>=3)
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37
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38 **This wrapper**:
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39
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40 Copyright (C) 2013-2014 Youri Hoogstrate
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41
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42 This program is free software: you can redistribute it and/or modify
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43 it under the terms of the GNU General Public License as published by
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44 the Free Software Foundation, either version 3 of the License, or
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45 (at your option) any later version.
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46
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47 This program is distributed in the hope that it will be useful,
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48 but WITHOUT ANY WARRANTY; without even the implied warranty of
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49 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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50 GNU General Public License for more details.
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51
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52 You should have received a copy of the GNU General Public License
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53 along with this program. If not, see <http://www.gnu.org/licenses/>.