Mercurial > repos > yhoogstrate > fastq_replace_dots_for_n

changeset 1:956b18863409 draft

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Uploaded
author yhoogstrate
date Thu, 19 Dec 2013 10:53:43 -0500
parents f2939b8fb2e1
children 6970b9f71095
files FASTQ_replace_dots_for_N.xml
diffstat 1 files changed, 19 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FASTQ_replace_dots_for_N.xml	Thu Dec 19 10:53:43 2013 -0500
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="FASTQ_replace_dots_for_N" name="FASTQ_replace_dots_for_N">
+	<description>Replace DOTs for Ns in sequences in FASTQ files.</description>
+	<command interpreter="python">
+		FASTQ_replace_dots_for_N.py $input > $output
+	</command>
+	
+	<inputs>
+		<param name="input" type="data" format="fastq" label="Alignment file" help="The input FASTQ file with dots inside the sequences." />
+	</inputs>
+	
+	<outputs>
+		<data format="fastq" name="output" label="${tool.name} on ${alignments[0].file.hid}: ${alignments[0].file.name}" />
+	</outputs>
+	
+	<help>
+		FASTQ_replace_dots_for_N
+	</help>
+</tool>