view FASTQ_replace_dots_for_N.xml @ 1:956b18863409 draft

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<?xml version="1.0" encoding="UTF-8"?>
<tool id="FASTQ_replace_dots_for_N" name="FASTQ_replace_dots_for_N">
	<description>Replace DOTs for Ns in sequences in FASTQ files.</description>
	<command interpreter="python">
		FASTQ_replace_dots_for_N.py $input > $output
	</command>
	
	<inputs>
		<param name="input" type="data" format="fastq" label="Alignment file" help="The input FASTQ file with dots inside the sequences." />
	</inputs>
	
	<outputs>
		<data format="fastq" name="output" label="${tool.name} on ${alignments[0].file.hid}: ${alignments[0].file.name}" />
	</outputs>
	
	<help>
		FASTQ_replace_dots_for_N
	</help>
</tool>