Mercurial > repos > yhoogstrate > fastq_replace_dots_for_n
comparison FASTQ_replace_dots_for_N.xml @ 1:956b18863409 draft
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author | yhoogstrate |
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date | Thu, 19 Dec 2013 10:53:43 -0500 |
parents | |
children | 6970b9f71095 |
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0:f2939b8fb2e1 | 1:956b18863409 |
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1 <?xml version="1.0" encoding="UTF-8"?> | |
2 <tool id="FASTQ_replace_dots_for_N" name="FASTQ_replace_dots_for_N"> | |
3 <description>Replace DOTs for Ns in sequences in FASTQ files.</description> | |
4 <command interpreter="python"> | |
5 FASTQ_replace_dots_for_N.py $input > $output | |
6 </command> | |
7 | |
8 <inputs> | |
9 <param name="input" type="data" format="fastq" label="Alignment file" help="The input FASTQ file with dots inside the sequences." /> | |
10 </inputs> | |
11 | |
12 <outputs> | |
13 <data format="fastq" name="output" label="${tool.name} on ${alignments[0].file.hid}: ${alignments[0].file.name}" /> | |
14 </outputs> | |
15 | |
16 <help> | |
17 FASTQ_replace_dots_for_N | |
18 </help> | |
19 </tool> |