Mercurial > repos > yating-l > trfbig

annotate tool_dependencies.xml @ 2:7b681617f31d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
author yating-l
date Mon, 01 May 2017 16:59:29 -0400
parents ed530f232f63
children 0385408147c0
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
1 <?xml version="1.0"?>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
2 <tool_dependency>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
3 <!-- Package trfBig -->
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
4 <package name="trfBig" version="1.0">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
5 <install version="1.0">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
6 <actions>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
7 <action type="download_binary" target_directory="bin">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
8 <url_template os="darwin">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/trfBig</url_template>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
9 <url_template os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/trfBig</url_template>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
10 </action>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
11 <action type="chmod">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
12 <file mode="750">$INSTALL_DIR/bin/trfBig</file>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
13 </action>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
14 <action type="set_environment">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
16 </action>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
17 </actions>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
18 </install>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
19 <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
20 </package>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
21
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
22 <!-- Package trf -->
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
23 <!-- https://tandem.bu.edu/trf/downloads/trf407b.linux64 -->
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
24 <package name="trf" version="4.07b">
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
25 <install version="1.0">
1
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
26 <actions_group>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
27 <actions architecture="x86_64" os="linux">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
28 <action type="download_by_url" target_directory="bin">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
29 <url_template os="linux">https://tandem.bu.edu/trf/downloads/trf407b.linux64</url_template>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
30 </action>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
31 <action type="move_file" rename_to="trf">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
32 <source>$INSTALL_DIR/trf407b.linux64</source>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
33 <destination>$INSTALL_DIR/bin</destination>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
34 </action>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
35 <action type="chmod">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
36 <file mode="750">$INSTALL_DIR/bin/trf</file>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
37 </action>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
38 <action type="set_environment">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
39 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
40 </action>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
41 </actions>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
42 <actions architecture="x86_64" os="darwin">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
43 <action type="download_by_url" target_directory="bin">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
44 <url_template os="darwin">https://tandem.bu.edu/trf/downloads/trf407b.macos64</url_template>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
45 </action>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
46 <action type="move_file" rename_to="trf" os="darwin">
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
47 <source>$INSTALL_DIR/trf407b.macos64</source>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
48 <destination>$INSTALL_DIR/bin</destination>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
49 </action>
2
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
50 <action type="chmod">
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
51 <file mode="750">$INSTALL_DIR/bin/trf</file>
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
52 </action>
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
53 <action type="set_environment">
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
54 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
7b681617f31d planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 1
diff changeset
55 </action>
1
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
56 </actions>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
57 </actions_group>
ed530f232f63 planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents: 0
diff changeset
58
0
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
59 </install>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
60 <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
61 </package>
9b27da80dcea planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
yating-l
parents:
diff changeset
62 </tool_dependency>