Mercurial > repos > yating-l > trfbig

diff tool_dependencies.xml @ 0:9b27da80dcea draft

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planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
author yating-l
date Mon, 01 May 2017 16:04:14 -0400
parents
children ed530f232f63
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon May 01 16:04:14 2017 -0400
@@ -0,0 +1,49 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <!-- Package trfBig -->
+    <package name="trfBig" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_binary" target_directory="bin">
+                    <url_template os="darwin">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.${architecture}/trfBig</url_template>
+                    <url_template os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.${architecture}/trfBig</url_template>
+                </action>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/trfBig</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
+    </package>
+
+    <!-- Package trf -->
+    <!-- https://tandem.bu.edu/trf/downloads/trf407b.linux64 -->
+    <package name="trf" version="4.07b">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_directory="bin">
+                    <url_template os="darwin">https://tandem.bu.edu/trf/downloads/trf407b.macos64</url_template>
+                    <url_template os="linux">https://tandem.bu.edu/trf/downloads/trf407b.linux64</url_template>
+                </action>
+                <action type="move_file" rename_to="trf">
+                    <source>$INSTALL_DIR/trf407b.macos64</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file" rename_to="trf">
+                    <source>$INSTALL_DIR/trf407b.linux64</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/trf</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>The tools downloaded by this dependency definition are free for academic use.</readme>
+    </package>
+</tool_dependency>
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