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annotate apolloUserManager.py @ 0:9945eba268e6 draft default tip

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planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
author yating-l
date Mon, 27 Nov 2017 12:49:27 -0500
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9945eba268e6 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
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1 #!/usr/bin/env python
9945eba268e6 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
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2 import os
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3 import sys
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4 import argparse
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5 import json
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6 import logging
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7 import socket
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8 from apollo.ApolloInstance import ApolloInstance
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9 from apollo.ApolloUser import ApolloUser
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10 from util.Reader import Reader
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11 from util.Logger import Logger
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14 def main(argv):
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15 parser = argparse.ArgumentParser(description='Upload a hub to display on Apollo.')
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16 parser.add_argument('-j', '--data_json', help='JSON file containing the metadata of the inputs')
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17 parser.add_argument('-o', '--output', help='HTML output')
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19 # Get the args passed in parameter
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20 args = parser.parse_args()
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21 json_inputs_data = args.data_json
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22 outputFile = args.output
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24 ##Parse JSON file with Reader
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25 reader = Reader(json_inputs_data)
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27 # Begin init variables
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29 apollo_port = reader.getPortNum()
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30 apollo_host = "http://localhost:"+ apollo_port + "/apollo"
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31 apollo_admin_user = reader.getAdminUser()
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32 toolDirectory = reader.getToolDir()
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33 debug_mode = reader.getDebugMode()
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35 operations_dictionary = reader.getOperationList()
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36 #OPERATIONS = ['create', 'delete', 'add', 'remove']
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37 #create_user_list = reader.getOperationList("create")
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38 #delete_user_list = reader.getOperationList("delete")
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39 #remove_user_list = reader.getOperationList("remove")
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40 #add_user_list = reader.getOperationList("add")
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44 #### Logging management ####
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45 # If we are in Debug mode, also print in stdout the debug dump
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46 log = Logger(tool_directory=toolDirectory, debug=debug_mode)
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47 log.setup_logging()
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49 logging.info("#### Apollo User Manager: Start on Apollo instance: %s #### ", apollo_host)
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50 logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args))
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52 # Set up apollo
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53 apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory)
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54 apollo.manageApolloUser(operations_dictionary)
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56 logging.info('#### Apollo User Manager: Congratulation! ####\n')
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61 if __name__ == "__main__":
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62 main(sys.argv)