diff apolloUserManager.py @ 0:9945eba268e6 draft default tip

planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/apolloUserManager.py	Mon Nov 27 12:49:27 2017 -0500
@@ -0,0 +1,62 @@
+#!/usr/bin/env python
+import os
+import sys
+import argparse
+import json
+import logging
+import socket
+from apollo.ApolloInstance import ApolloInstance
+from apollo.ApolloUser import ApolloUser
+from util.Reader import Reader
+from util.Logger import Logger
+
+
+def main(argv):
+    parser = argparse.ArgumentParser(description='Upload a hub to display on Apollo.')
+    parser.add_argument('-j', '--data_json', help='JSON file containing the metadata of the inputs')
+    parser.add_argument('-o', '--output', help='HTML output')
+    
+    # Get the args passed in parameter
+    args = parser.parse_args()
+    json_inputs_data = args.data_json
+    outputFile = args.output
+    
+    ##Parse JSON file with Reader
+    reader = Reader(json_inputs_data)
+
+    # Begin init variables
+    
+    apollo_port = reader.getPortNum()
+    apollo_host = "http://localhost:"+ apollo_port + "/apollo"
+    apollo_admin_user = reader.getAdminUser()
+    toolDirectory = reader.getToolDir()
+    debug_mode = reader.getDebugMode()
+
+    operations_dictionary = reader.getOperationList()
+    #OPERATIONS = ['create', 'delete', 'add', 'remove']
+    #create_user_list = reader.getOperationList("create")
+    #delete_user_list = reader.getOperationList("delete")
+    #remove_user_list = reader.getOperationList("remove")
+    #add_user_list = reader.getOperationList("add")
+
+    
+        
+    #### Logging management ####
+    # If we are in Debug mode, also print in stdout the debug dump
+    log = Logger(tool_directory=toolDirectory, debug=debug_mode)
+    log.setup_logging()
+
+    logging.info("#### Apollo User Manager: Start on Apollo instance: %s #### ", apollo_host)
+    logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args))
+
+    # Set up apollo
+    apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory) 
+    apollo.manageApolloUser(operations_dictionary)
+    
+    logging.info('#### Apollo User Manager: Congratulation! ####\n')
+    
+
+
+
+if __name__ == "__main__":
+    main(sys.argv)
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