Mercurial > repos > yating-l > jbrowsearchivecreator

changeset 29:f5fbe894af85 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 691e5366893905d30943a3cb8cdfb6341f0f5362-dirty
author yating-l
date Fri, 13 Oct 2017 16:00:38 -0400
parents 0c075fac6719
children 2191bd0798a9
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Oct 13 15:32:35 2017 -0400
+++ b/tool_dependencies.xml	Fri Oct 13 16:00:38 2017 -0400
@@ -83,12 +83,14 @@
     <package name="apollo_api" version="3.0.3">
         <install version="1.0">
             <actions>
+                <action type="download_by_url">https://github.com/galaxy-genome-annotation/python-apollo/archive/3.0.3.tar.gz</action>
                 <action type="make_directory">$INSTALL_DIR/apollo</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/apollo &amp;&amp; 
+                    python setup.py install --install-lib $INSTALL_DIR/apollo
+                </action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="HOME">$INSTALL_DIR/apollo</environment_variable>
-                </action>
-                <action type="setup_virtualenv">
-                    apollo==3.0.3
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/apollo</environment_variable>
                 </action>
             </actions>
         </install>