# HG changeset patch
# User yating-l
# Date 1507924838 14400
# Node ID f5fbe894af85e14cad903c9fbe535b335d8b1c26
# Parent  0c075fac6719e0bc4439e206cf649e80c5880bf4
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 691e5366893905d30943a3cb8cdfb6341f0f5362-dirty

diff -r 0c075fac6719 -r f5fbe894af85 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Oct 13 15:32:35 2017 -0400
+++ b/tool_dependencies.xml	Fri Oct 13 16:00:38 2017 -0400
@@ -83,12 +83,14 @@
     <package name="apollo_api" version="3.0.3">
         <install version="1.0">
             <actions>
+                <action type="download_by_url">https://github.com/galaxy-genome-annotation/python-apollo/archive/3.0.3.tar.gz</action>
                 <action type="make_directory">$INSTALL_DIR/apollo</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/apollo &amp;&amp; 
+                    python setup.py install --install-lib $INSTALL_DIR/apollo
+                </action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="HOME">$INSTALL_DIR/apollo</environment_variable>
-                </action>
-                <action type="setup_virtualenv">
-                    apollo==3.0.3
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/apollo</environment_variable>
                 </action>
             </actions>
         </install>