Mercurial > repos > yating-l > jbrowse_hub
changeset 21:7e1c25080972 draft
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty
| author | yating-l |
|---|---|
| date | Tue, 14 Mar 2017 16:17:48 -0400 |
| parents | 49841ae99869 |
| children | fcf2865c950c |
| files | TrackHub.py |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/TrackHub.py Tue Mar 14 15:37:10 2017 -0400 +++ b/TrackHub.py Tue Mar 14 16:17:48 2017 -0400 @@ -58,15 +58,14 @@ bam_track = dict() bam_track['type'] = 'JBrowse/View/Track/Alignments2' bam_track['label'] = track['fileName'] - bam_track['urlTemplate'] = os.path.join('../raw', track['fileName']) + bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) utils.add_tracks_to_json(json_file, bam_track, 'add_tracks') print "add bam track\n" elif track['dataType'] == 'bigwig': json_file = os.path.join(self.json, "trackList.json") bigwig_track = dict() - bigwig_track['label'] = 'rnaseq' - bigwig_track['key'] = 'RNA-Seq Coverage' - bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName']) + bigwig_track['label'] = track['fileName'] + bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName']) bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot' bigwig_track['variance_band'] = True bigwig_track['style'] = dict()