# HG changeset patch
# User yating-l
# Date 1489522668 14400
# Node ID 7e1c25080972a3384261522fec31948f402eda7d
# Parent  49841ae99869bba70ce3ee8a690893ef294c7053
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit e81fecac281f299db00cfc88a068e056b031ae9d-dirty

diff -r 49841ae99869 -r 7e1c25080972 TrackHub.py
--- a/TrackHub.py	Tue Mar 14 15:37:10 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 16:17:48 2017 -0400
@@ -58,15 +58,14 @@
             bam_track = dict()
             bam_track['type'] = 'JBrowse/View/Track/Alignments2'
             bam_track['label'] = track['fileName']
-            bam_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
+            bam_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
             utils.add_tracks_to_json(json_file, bam_track, 'add_tracks')
             print "add bam track\n"
         elif track['dataType'] == 'bigwig':
             json_file = os.path.join(self.json, "trackList.json")
             bigwig_track = dict()
-            bigwig_track['label'] = 'rnaseq'
-            bigwig_track['key'] = 'RNA-Seq Coverage'
-            bigwig_track['urlTemplate'] = os.path.join('../raw', track['fileName'])
+            bigwig_track['label'] = track['fileName']
+            bigwig_track['urlTemplate'] = os.path.join(self.raw, track['fileName'])
             bigwig_track['type'] = 'JBrowse/View/Track/Wiggle/XYPlot'
             bigwig_track['variance_band'] = True
             bigwig_track['style'] = dict()