Mercurial > repos > yating-l > jbrowse_hub

changeset 14:0e29c929a8ee draft

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planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty
author yating-l
date Tue, 14 Mar 2017 14:43:09 -0400
parents 445043f2d9b1
children 8627394693c6
files jbrowse_hub.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/jbrowse_hub.xml	Tue Mar 14 14:34:45 2017 -0400
+++ b/jbrowse_hub.xml	Tue Mar 14 14:43:09 2017 -0400
@@ -149,7 +149,7 @@
             <repeat name="format">
                 <conditional name="formatChoice">
                     <param name="format_select" value="gff3"/>
-                    <param name="GFF3" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
+                    <param name="GFF3-transcript" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
                 </conditional>
             </repeat>
             <output name="output" file="hubtest" >
--- a/tool_dependencies.xml	Tue Mar 14 14:34:45 2017 -0400
+++ b/tool_dependencies.xml	Tue Mar 14 14:43:09 2017 -0400
@@ -72,7 +72,6 @@
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/plugins</environment_variable>
                 </action>
             </actions_group>
          </install>